Abstract:Twenty-three isolates of Apple stem grooving virus were obtained from pear and apple by mechanically inoculating on Chenopodium quinoa and ELISA confirmation. Specific fragments were amplified from all these samples by tube capture reverse transcription-polymerase chain reaction (TC-RT-PCR). These PCR products showed three type bands with different migration rates (500bp, 530bp and 600bp) on 5%PAGE. The PCR products of three isolates P-L4, P-6-1-17 and P-3-2-67 from pear with different migration rates were cloned and sequenced. A BLAST search result revealed that these three isolates had 92.2%, 90.4% and 88.4% nucleotide sequence similarity with the 3‘ends of P-209, an isolates from apple. And the nucleotide sequences among these three isolates also showed some different. The similarities of P-L4 and P-3-2-67, P-L4 and P-6-1-17, P-6-1-17 and P-3-2-67 were 90.4%, 95.5% and 88.6%, respectively.