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Phylogenetic analysis of Malaxideae(Orchidaceae: Epidendroideae): two new species based on the combined nrDNA ITS and chloroplast matK sequences

基于ITS和matK序列的兰科沼兰族分子系统研究及二新种(英文)



全 文 :广 西 植 物 Guihaia Aug.2015,35(4):447-463           http://journal.gxzw.gxib.cn 
DOI:10.11931/guihaia.gxzw201506015
唐光大,张国强,洪文君,等.基于ITS和matK序列的兰科沼兰族分子系统研究及二新种[J].广西植物,2015,35(4):447-463
TangGD,ZhangGQ,HongWJ,etal.PhylogeneticanalysisofMalaxideae(Orchidaceae:Epidendroideae):twonewspeciesbasedonthecombined
nrDNAITSandchloroplastmatKsequences[J].Guihaia,2015,35(4):447-463
PhylogeneticanalysisofMalaxideae(Orchidaceae:
Epidendroideae):twonewspeciesbasedonthecombined
nrDNAITSandchloroplastmatKsequences
TANGGuangGDa1,2,ZHANGGuoGQiang2,HONGWenGJun1,
LIUZhongGJian1,2,ZHUANGXueGYing1∗
(1.CollegeofForestryandLandscapeArchitecture,SouthChinaAgriculturalUniversity,Guangzhou510642,China;
2.ShenzhenKeyLaboratoryforOrchidConservationandUtilization,TheNationalOrchidConservationCenter
ofChinaandTheOrchidConservationandResearchCenterofShenzhen,Shenzhen518114,China)
Abstract:Malaxideaeisalargercosmopolitanorchidtribeconsistingofnearly2000speciesandisdistributedworldG
wide,excludingthepolaranddesertregions.Itisabundantinthetropicalregions,particularlyinAustralia,andthetropiG
calAsia,SoutheastAsia,thetropicalAmericasandAfrica.Molecularandmorphologicalanalyseshavebeenperformedto
establishthephylogeneticrelationshipswithinthistribe.However,thesubtribeandintergenericrelationshipsremainunG
clear,andthegenusdefinitionofthistribeisconsiderablycontroversial.Themaximumparsimony,maximumlikelihood
andBayesianinferenceanalyseswereperformedbasedonthecombinedsequencesofthenuclearITSandchloroplast
matKgenesof133taxa(10otheraliedspeciesasoutgroups),whichrepresentnearlyalofthemajorgeneraoftheMalG
axideae.TheseresultssuggestedthatMalaxideaecouldbedividedintothreeclades,theepiphyticOberoninae,theterresG
trialLiparidinae,andaterrestrialCrepidiumclade.TheOberoninaeandLiparidinaecouldbedividedintosixgeneraand
fivegenerarespectively,andCrepidiumcladecamposesoffourgenera.ThesubtribeYpsilorchidinaeshouldbeatributed
toOberoninae.DisticholiparisshouldberemovedbecauseitsharedthesametypewithStichorkis.ThephylogeneticreG
lationshipofCrepidiumandDieniaismonophyletic,althoughtheyhavediferentlipstructures.Inaddition,twonew
speciesfoundinSouthwestChinaandnorthernVietnam,PlatystyliparismalipoensisG.D.Tang,X.Y.Zhuang&Z.J.
LiuandCestichispingtaoiG.D.Tang,X.Y.Zhuang&Z.J.Liu,weredescribedbasedonthemolecularanalysisand
morphologicalobservation.
Keywords:Malaxideae;nrDNAITS;matK;phylogeny;Paraphyletic
CLCnumber:Q943.2  Documentcode:A  ArticleID:1000G3142(2015)04G0447G17
基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
唐光大1,2,张国强2,洪文君1,刘仲健1,2,庄雪影1∗
(1.华南农业大学 林学与风景园林学院,广州510642;2.深圳市兰科植物保护与利用重点实验室,
国家兰科植物保护中心,深圳市兰科植物保护研究中心,广东 深圳518114)
摘 要:沼兰族是兰科植物的大族之一,约2000种,除了极地和沙漠地区,全球均有分布.该族植物主要分
收稿日期:2015G06G13  修回日期:2015G07G06
基金项目:国家林业发展计划项目(2011G100);广东省自然科学基金(2014A030310465);深圳市科技计划项目 (JC201005310689A).
作者简介:唐光大(1982G),男,贵州普安人,博士,讲师,研究方向为植物系统与进化,(EGmail)gdtang@scau.edu.cn.
∗通讯作者:庄雪影,博士,教授,研究方向为植物系统与进化,(EGmail)xyzhuang@scau.edu.cn.
布在热带地区,尤其在东南亚、热带美洲、非洲以及澳大利亚等地区种类非常丰富.目前,已有关于该族植物
形态和分子系统的研究,但有关该族亚族和属间的系统关系尚不清楚,属的界定争议也较大.该文基于核基
因片段ITS和叶绿体基因片段matK序列,采用最大简约法、最大似然法贝叶斯推理分析法,对现有沼兰族主
要属的123种植物和10个外类群植物进行了分子系统学研究.结果表明:沼兰族主要分为3个亚族分支,包
括附生的鸢尾兰亚族(Oberoninae)、地生的羊耳蒜亚族(Liparidinae)和沼兰亚族分支(Crepidiumclade).鸢
尾兰亚族包括6个属、羊耳蒜亚族分支包括5个属、沼兰亚族分支包括4个属;丫瓣兰亚族(Ypsilorchidinae)
应归并为鸢尾兰亚族;Disticholiparis属与Stichorkis属的模式标本相同,应并入Stichorkis属;沼兰属(CreG
pidium)和无耳沼兰属(Dienia)的唇瓣结构差异较大,但二者均为单系类群.此外,在收集野外实验材料过程
中,发现了2种产自中国西南部和越南北部的沼兰族新种,分别命名为麻栗坡羊耳蒜(PlatystyliparismaliG
poensisG.D.Tang,X.Y.Zhuang&Z.J.Liu)和秉滔羊耳蒜(CestichispingtaoiG.D.Tang,X.Y.Zhuang&
Z.J.Liu).
关键词:沼兰族;核基因ITS;matK;系统学;并系类群
  Malaxideaeisoneoftheoldestorchidtribesand
encompassesnearly2000speciesthatarenativeto
bothtemperateandtropicalareasworldwide(Chenet
al.,2009).Lindley(1826)firstclassifiedandrevised
21generainto Malaxideae.SixofthesegenerareG
mainedinthistribe,includingMalaxis,Microstylis
(attributedtoCrepidiumnow),Liparis,Dienia,EmG
pusa,andPedilea,butother15generawereattributed
toothertribes.Lindley(1830)redefinedthistribeand
emphasizedthatthe mostimportantfeatureswere:
polencoheringinmassesofafirmwaxytexture,withG
outanyofthecelularsubstance,andremainingunder
theformofadistinctglandlyinguponthestigma.
Pfitzer(1887)redefinedthistribeagainas“plantwith
leavesduplicative,stem gracileorincrassateleaved
pseudobulb;leaflamina exceptforCestichis and
Oberonia,withcontinentbasalsheath;petalsandlaG
belummoreconspicuousthanexternalsepals,column
apodalorformingashortspurwiththelabelum,anG
thererectorincumbent,polinia4,waxy,glabrous;
dispersed”.Schlechter(1911)revisedtheLiparidinae
(Malaxideae)ofNewGuineaandleftMalaxis,MicroG
stylis,Orestias,Liparis,Cestichis,OberoniaandHipG
peophylluminthissubtribe.Dressler(1981)emphaG
sizedthatthemaincharactersofMalaxideaewerenot
onlythenakedpolinia,butacolumnlackingafootat
thegynostemiumbase,andstatedthatpolinialacking
adistinctcaudiclewerealsoequalcharactersfordistinG
guishingthistribe.Szlachetko(1995)recognized16
generainthesubtribeMalaxidinae,sevenwerenewly
describedbyhim.HedividedMalaxideaeintotwosubG
tribesofterrestrialMalaxidinaeandOberoninae,but
thelatterwasnamedbyAveryanov(1991).Szlachetko
andMargońska(2002)provideddetaileddrawingsof
thecolumnstructureofrepresentativesof15genera.
Pridgeonetal.(2005)stated14generainthetribeof
Malaxideae.However,thedescriptionof Malaxideae
wasquiteaugmented,especialyintermsofleafstrucG
ture,floralarrangementwithintheinflorescences,tepal
formandovary.
MalaxideaeisalsooneofthefewgroupsoforG
chidsthatcontainlargenumbersofbothobligateterG
restrialandepiphyticspecies(Atwood,1986).There
areobviousdiferencesbetweenterrestrialandepiphytG
ictaxainvegetativeorganscharacters.Anexampleis
thattheterrestrialgenera,suchasCrepidium and
Diteilis,havesignificantlyplicateleaves,buttheepiG
phyticgeneraareconduplicateexceptforOberoniaand
afewLiparisspecies.However,theirflowermorpholG
ogiesareratherhomogenous,whicharetypicalyvery
smal,bornonaterminalinflorescence,containinga
single,terminal,incumbentanther,usualywithfour
nakedpolinia (Cameron,2005),onlyafewspecies
havetwopolinia(Lietal.,2013).Manyspeciesof
Malaxideaearepolinatedbyfungusgnats,andonlya
fewarepolinatedbyantsandichneumonflies(Tang
etal.unpublisheddata).
Inrecentyears,thereareconsiderablecontinuing
controversyaboutthesizeofgenerawithintheMalG
axideaeduetotheirwidedistributionanddiversemorG
phology,andthemaindebatesfocusonthegenericdefG
initionofthistribe.InthestrictestandmostconservaG
844 广 西 植 物                  35卷
tivesenses,somescholarsconsideredthatthetribe
shouldbedividedintoatleastthreegenera:Oberonia,
Liparis,andMalaxis,butstil manygenerawereesG
tablishedorseparated(Cameron,2005).Forexample,
Dressler(1993)recordedthatMalaxideaeconsistedof
sixgenera:Hippeophyllum,Liparis,Malaxis,OresG
tias,OberoniaandRisleya,butnowRisleyainColaG
bieae(Xiangetal.,2014).Szlachetko(1995)suggesG
tedthereweremorethan18generainthistribe.FurG
thermore,MargońGskaandSzlachetkodescribedsome
newgenerasuchasAlatiliparis (Margońskaetal.,
2001),Disticholiparis(Margońskaetal.,2004),SeiG
denforchis (Margońska,2006),Platystyliparis
(Margońska,2007),andCrossoliparis (Margońska,
2009).Margońskaetal.(2012)describedthat25genG
erabelongedtothistribeanddividedthemintothree
subtribes:Oberoninae(containingtwogenera),MalG
axidinae(containing12genera),andLiparidinae(conG
taining11genera).
Althoughsome molecularphylogeneticstudies
haveexaminedthephylogeneticandevolutionaryrelaG
tionshipsofMalaxideae(Cameron,2005;Margońskaet
al.,2012),someresultsindicatedthatLiparisand
Malaxiswerepolyphyleticaliances.Cameron(2005)
describedandidentifiedfour habitGleafGmorphology
syndromesasindicativeofphylogeneticrelationshipsin
Malaxideae,suchasepiphyteswithseveralelongate
conduplicateleaves(Liparis)andwithunifacial,laterG
alycompressed,equitantleaves(Oberonia),terrestrial
withtworoundedconduplicateleaves(Malaxis)and
terrestrialwithplicateleaves(Crepidium).However,
thegenericdefinitionofMalaxideaeremainsunclear.
Morecomprehensivestudiesareneededtoexplorethe
exactevolutionaryrelationshipsofMalaxideaeatthe
genericlevel.MalaxideaeshouldbereGclassified,espeG
cialygiventheaggregatedstudyresults,combined
withthemolecularphylogeneticsandtheirhabits,vegG
etation,andmorphologies.
Inthisstudy,thenewsequencesofnuclearITS
andchloroplastmatKfrom35specieslocatedinChina
werecombinedwiththesequencesquotedfromGenG
Bank,andassessedforthephylogeneticrelationshipsaG
mongMalaxideae,incombinationwiththeplanthabG
its,pseudobulbsandleaves.Inaddition,weprovidea
supportedphylogeneticresolutionforMalaxideaeand
comprehensiveresultsregardingthistribe.
1 MaterialsandMethods
1.1Materials
Atotalof121speciesofMalaxideaewereanaG
lyzed,consistingofmaingeneraofMalaxideae,incluG
dingLiparis,Oberonia,Malaxis,Crepidium,Dienia,
Empusa,Oberonioides,Stichorkis,Cestichis,and
Platystyliparis.Tendiferentaliedspecies,AcantheG
phippium mantinianum,AncistrochilusrothschildiaG
nus,Bulbophyllumodoratissimum,CalantheargenG
teostriata,C.sinica,Collabiumsimplex,Dendrobium
crumenatum,Listerasmalli,Phaiustancarvilleae,
andRidleyellapaniculata,wereselectedasoutgroups
accordingtopreviousstudies(VandenBergetal.
2005).Thereare35sequencesofspeciesweregeneraG
tednewforthisstudyfromYunnan,Guangdongetc,
and98sequencesofspeciesweredownloadedfromexG
istingsequencesinGenBank.
1.2Amplificationandsequencing
TotalDNAwasextractedfromfreshmaterialor
silicagelGdriedplanttissueusinga MultisourceGeG
nomicDNA MiniprepKit(AxygenBiosciences)acG
cordingtothemanufacturer’sinstructions.TheampliG
ficationreactionincludedtotalDNA,primers,ExGTaq
buferandExGTaq DNApolymerase (Takara Bio).
Thepolymerasechainreaction(PCR)profileconsisted
ofaninitial5minpreGmeltingstageat95℃,folowed
by30cyclesof30sat95℃ (denaturation),30sat50
℃to55 ℃ (annealingtemperaturewasdetermined
basedontheprimerrequirement),1minto3minat72
℃ (extensiontimewasdeterminedbasedonthelength
ofthetargetDNAregion)andafinal10minextension
at72℃.
AmplificationoftheITSregionwasperformeduG
singtheprimerpairsITSAandITSB(Mikeetal.,
1999).FormatKsequences,amplification wasperG
formedusingtheprimermatKG731F (Liuetal.,
2011).Table1containsthedetailedinformation.
ThePCRproductswererunon1.5%agarosegels
9445期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
Table1 Primersusedinthisstudy
Primer Sequence(5′to3′) Origin
ITSA GGAAGGAGAAGTCGTAACAAGG Mikeetal.,
1999
ITSB CTTTTCCTCCGCTTATTGATATG Mikeetal.,
1999
matKG731F AAGAAAAGATTCTTTTGGTTCC Liuetal.,
2011
toassessthequalityoftheamplifiedDNA.Thegels
withthetargetproductswereexcisedpurifiedusing
DNAGelExtractionKits(AxygenBiosciences)and
thensequencedbyLifeTechnologiesCorporation.
1.3Sequenceeditingandassembling
Bothforwardandreversesequences,aswelas
electropherograms,wereeditedandassembledusing
DNASTAR (http://www.dnastar.com/).DNAseG
quenceswerealignedtothemusclemodelandmanualG
lyadjustedusingMEGA5.05(Tamuraetal.,2011).
ThealignedsequencesareavailablefromthecorreG
spondingauthorsuponrequest.
1.4Dataanalyses
ThedatasetsofanuclearITS,plastidDNAmatK
andtheircombinationwereusedforthesubtribeand
genuslevelanalysis.Insertions,deletionsandsomeunG
availablesequencesweretreatedasmissing.PhylogeG
neticanalyseswereperformedusingBayesianinference
(BI),maximumparsimony(MP)andmaximumlikeliG
hoodanalyses.ThebestGfitmodelforeachdatasetwas
selectedusingModeltest3.7undertheAkaikeInforG
mationCriterion(Posadaetal.,1998).ThehomogeG
neitiesbetweennrDNAITSdata,andmatKdataset
weretestedusingtheincongruencelengthdiference
(ILD)test(Farrisetal.,1995),asimplementedin
PAUP∗ version4.0b10 (Swoford,2002).TBR
branchwasswappingandkeepingnomorethan100
treesperrandomadditionalreplicate.AspreviouslydeG
scribedbyCunningham (1997),asignificancelevelof
P=0.01wasadoptedforthistest.
MPanalyseswereperformedusingthePAUP∗
version4.0b10(Swoford,2002).AlcharacterswereeG
qualyweighedandunordered.Thesettingsincluded
1000randomadditionalsequencesandaheuristicsearch
withtreebisectionGreconnectionbranchswapping.Table
2listthetreelength(TL),consistencyindex(CI)and
retentionindex(RI).MLanalysiswasperformedusing
RA×MLwith100bootstrapreplicatesandsettingsas
describedin(Stamatakisetal.,2008).BIanalysiswas
performedusingMrBayes3.1.2(Ronquistetal.,2003).
Thefolowingsettingswereapplied:samplingfrequency
=1000,temp=0.1,burnGin=10000andnumberof
Markovchain MonteCarlogenerations=40000000.
Thefirst10000treeswerediscardedasburnGintoenG
surethatthechainsreachedstationarity.AmajorityGrule
consensustreewasconstructedonthesetreessampled
aftergeneration40000000.
Table2 Parsimonystatisticsfromphylogenetic
analysesofthevariousdatasets
Data Taxa Alignedlength
Information
site TL CI RI
ITS 121 847 475(56.1%) 2946 0.37780.8045
matK 120 1405 308(21.9%) 1030 0.62140.8641
Combined 139 2252 783(34.8%) 4107 0.43640.8151
2 ResultsandAnalysis
ITSanalysissupportedthatMalaxideaecouldbe
dividedintothreeclades,includingtwoterrestrial
cladesandoneepiphyticclade(PP=100%,BPMP=
94%,BPML=99%,Fig.1).Thefirstterrestrialclade
includedfivegenera:Malaxis (containing10taxa),
Liparis(12taxa),Oberonioides (2taxa),andtwo
unnamedgenera(CladeB,C;Fig.1).ThesecondterG
restrialcladeincludedfivegenera:Crepidium (15taxG
a),Dienia(4taxa),Diteilis(7taxa),Empusa(4taxG
a)andanunnamedgenus(CladeD;Fig.1).Among
theseclades,LitseaauriculatawasattributedtoMalG
axis,L.maingayiandL.purpureoviridisaresisters
toOberonioides.Thethirdepiphyticcladeconsistedof
sixgenera:Oberonia (15taxa),Platystyliparis (7
taxa),Cestichis (12taxa),Stichorkis (5taxa),and
twounnamedgenera(CladeE,F;Fig.1).Oberonia
wasmonophyleticinthistreeandasisterofLipariss.
l.(Fig.1).
TheresultsoftheBI,MPandMLanalysisofmatK
alsoshowedthatMalaxideaecouldbedividedintothree
clades(PP=100%,BPMP=96%,BPML=97%,Fig.
2).However,theposteriorprobabilitiesofthematK
054 广 西 植 物                  35卷
Fig.1 PhylogramobtainedfromBayesianinferenceanalysisofthenrDNAITSdataofMalaxideae Numbersatthenodesare
bootstrappercentagesandBayesianposteriorprobabilities,respectively.“-”indicatesthatthevaluesofPPorBPMPorBPMParelowerthan50%inthe
threeanalysis.PPistheleftvalueatthenodes;BPMPisthemiddlevalue,andBPMListherightvalue.
treewerelowerthanthoseoftheITStreeatthegenus
level.ThissequencemightbenotoptimalfortheperG
formanceofmolecularphylogeneticsofMalaxideaebeG
lowthesubtribeandgenus.Theseresultshavealso
beendescribedinapreviousstudy(Cameron,2005).
ThedatasetsfortheITSandmatKsequences
werecombinedintoasingledataset.Theconsensus
treessupportedthedivisionofMalaxideaeintothree
1545期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
Fig.2 PhylogramobtainedfromBayesianinferenceanalysisofthechloroplastmatKdataofMalaxideae Numbersatthenodes
arebootstrappercentagesandBayesianposteriorprobabilities,respectively.“-”indicatesthatthevaluesofPPorBPMPorBPMParelowerthan50%.
BIistheleftvalueatthenodes;BPMPisthemiddle,andBPMListheright.
mainclades,similartotheITSandmatKtrees,butthe
posteriorprobabilitiesandbootstrappercentageswere
higherthanthesetwosequences(PP=100%,BPMP=
99%,BPML=100%;Fig.3).Thefirstterrestrialclade
254 广 西 植 物                  35卷
Fig.3 PhylogramobtainedfromBayesianinferenceanalysisofthecombineddataofthenrDNAITSandchloroplastmatK
ofMalaxideae NumbersatthenodesarebootstrappercentagesandBayesianposteriorprobabilities,respectively.“-”indicatesthatthevaluesof
PPorBPMPorBPMParelowerthan50%.BIistheleftvalueatthenodes;BPMPisthemiddlevalue,andBPMListherightvalue.
wasstronglysupportedbythepolyphyleticgroups(PP
=98%,BPMP=100%,BPML=100%;Fig.3),consisG
tingofMalaxis,Liparis,Oberonioides,andthreeunG
namedgenus(CladeA,B,C;Fig.3).Surprisingly,their
3545期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
Fig.4 LivingplantsofPlatystyliparismalipoensisandP.assamica AGB.P.malipoensis
A.Floweringplant;B.Flower,frontview CGD.P.assamica C.Floweringplant;D.Flower,frontview.
morphologicalcharactersweresimilar,withthesame
shortpseudobulbsandconduplicateleaves.ThisterresG
trialcladeshouldbenamedLiparidinaebecauseitconG
tainsL.loeseli (L.)Rich.,thetypespeciesofLiparis
Rich.Thesecondterrestrialclade,includingCrepidiG
um,Dienia,Diteilis,Empusa,andanunnamedgeneG
ra(CladeD;Fig.3),wasalsostronglysupportedbased
onthepolyphyleticgroups(PP,BPMP,BPML=100%;
Fig.3).Thespeciesinthiscladeareunitedbyalonger
pseudobulbandplicateleaves.AlthoughsomesubG
tribeswerenamedinMalaxideae,suchasMalaxidinae
(Malaxeae)byBentham (1883),thetypespeciesof
Malaxis(M.spicata)isamongtheLiparidinaesubG
tribe.Thus,weintroducedthenewnameCrepidinae
forthissubtribetentativelyaccordingtotheclassified
historyofMalaxideae(Rasmussen,1979;Margońskaet
al.,2012).Thissubtribeconsistsofmainlyterrestrial
plicateleafspecies.ThethirdepiphyticcladeOberoniG
inaeconsistsofStichorkis,Platystyliparis,Cestichis,
Oberoniaandtwounnamedgenera(CladeE,F;PP=
454 广 西 植 物                  35卷
Fig.5 PlatystyliparismalipoensisG.D.Tang,X.Y.ZhuangetZ.J.Liu 1.Floweringplant;2.Flower,sideview;3.Flower,
frontview;4.Dorsalsepal;5.Lateralsepal;6.Petal;7.Lip;8.Poliniaandanthercap(DrawnbyX.Y.MafromtypeZ.J.Liu4416).
99%,BPMP=99%,BPML=100%;Fig.3).
3 Discussion
3.1SystematicstatusofMalaxideae
Malaxideaehavebeendificulttoplace within
Epidendroideaebecausetheylacktypicalappendages
ontheirpolinia,althoughtheyappeartohavesmal
viscidiainmostcases,therearestilsomeexceptional
anduniquespecies(Lietal.,2013;Suetal.,2014).
Columnmorphology,particularlythestructureofthe
poliniaandassociatedappendages,hasalwaysbeen
givenpreGeminenceinorchidclassification.Therefore,
proposalsastotherelationshipswithinthistribehave
beenlimited.Dressler(1993)hypothesizedthatalG
thoughDendrobieaeappeartobesecondarilynaked,
5545期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
Fig.6 LivingplantsofCestichispingtaoiandC.manni A,C,D.C.Pingtaoi A.Floweringplant;C.Inflorescence;
D.Flower,frontview B,E,F.C.mannii B.Floweringplant;E.Inflorescence;F.Flower,frontview.
Malaxideaemaybeprimitivelynaked.InthemorphoG
logicalanalysesaboutMalaxideae,twospeciesofLiG
pariswereamongalargenumberofEpidendroideaeon
apolytomy(Freudensteinetal.,1999),whereasanaG
nalysisbyCameronetal.(1999)onrbcLdatareG
vealedthatLiparisandMalaxisweresisterstoDenG
drobieaebutwithoutbootstrapsupportgreaterthan
50%.TheadditionofplastidpsaBormatKsequences
totherbcLdatasetdidnotachieveagreaterresolution
forthe position of Malaxideae (Cameron,2004;
Freudensteinetal.,2004).VandenBergetal.(2005)
placedDendrobieaeandMalaxideaeastwosuccessive
sistercladestotherestofEpidendroideae.ThesereG
sultsrevealedthat Malaxideae wasa monophyletic
cladeandcloselyrelatedtothetribeDendrobinae,alG
thoughthewelGsupportedconsensustreescannotbe
acquired.
InMalaxideaetribe,thebasictaxonomicproblem
654 广 西 植 物                  35卷
Fig.7 CestichispingtaoiG.D.Tang,X.Y.ZhuangetZ.J.Liu 1.Floweringplant;2.Flower,frontview;3.Flower,sideview;
4.Dorsalsepal;5.Lateralsepal;6.Petal;7.Lip;8.PoliniaandAnthercap(DrawnbyX.Y.MafromtypeZ.J.Liu5814).
isthelackofunequivocalcriteriafordistinguishingthe
genera.ManygenerasuggestedinpreviousstudiesapG
pearartificialorexhibitpolymorphism (Margońskaet
al.,2012).Eventhelocation,accesstotypespecimens,
andoriginalreferencesareunavailablebecauseoftheir
dispersal,ageandstateofpreservation(Szlachetkoet
7545期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
al.,2008).Mosttaxonomistsagreethatthetraditional
classificationof Malaxideaedividedintothree main
generaisunsatisfactoryandunnatural,butnoclear
strategyhasbeenoferedtoorganizethetribepreviG
ously(Cameron,2005).Inthisstudy,anupdatedphyG
logenyofMalaxideaeisproposedwithamoresampling
oftaxaandcombinedchloroplastandnucleardatathan
previousmolecularphylogenies.AndtheresultssugG
gestthatthetribeshouldbesupportedwiththreemain
subtribes,ratherthantwo(Averyanov,1991;SzlachetG
ko,1995).
3.2MoleculardataanalysisofMalaxideae
IntheMalaxideaetribe,twomaingeneraofLiG
parisandMalaxiswerepolyphyletic.ManynewgeneG
raareestablishedinrecentyears,butthesegeneraare
controversial.Inthisstudy,weanalyzed11established
generaand121speciesofMalaxideae,andthesetaxa
included mostoftherepresentativegenerainthis
tribe,althoughthesequencesfromspecieswithinsome
generawerenotexamined,suchasAllatiliparis,HipG
peophyllum,Seidenforchis andCrossoliparis.The
phylogeneticanalysesofthese121specieswereperG
formedusingBayesianinference(BI),maximumparsiG
mony(MP)andmaximumlikelihood(ML)foreach
dataset.TheBI,MPandMLtreesofeachdatasethad
highersimilartopologicalstructures(Figs.1,2,3),inG
dicatingthattheanalysishadthehighcongruenceand
thattheexperimentaldatawerereliable.ThediferG
encesbetweentheBI,MPandMLtreeswerethevalG
uesofthebootstrappercentagesorposteriorprobabiliG
tiesinsomenodes.
ThisstudyrevealedthatthesequenceofITSwas
betterthanmatKinresolvingtheintergenericandinG
terspecificrelationshipswithin Malaxideae.TheITS
andcombineddataoftwosequencesproducedapproxiG
matelyequivalenttreetopologies(Figs.1,3).TheconG
sensustreeofmatKwasweaklysupportedforthegeG
nusGlevelclassificationofMalaxideae(Fig.2),which
maybeduetoinsuficientvariationsinthesequenceof
matK(Table2).Manystudieshavedemonstratedthat
atlowertaxonomiclevels(tribesandbelow),theITS
nuclearribosomalDNAspacercanyieldbetterresults
thanproteinGcodinggenes(Marcinetal.,2010).ConG
versely,atthefamilylevel,plastidproteinGcodinggenes
havebecomethe primaryfocuses,includingrbcL
(Chaseetal.,1994,Freudensteinetal.,2004)and
matK(Freudensteinetal.,2004).Thisstudyfocused
onlowertaxonomiclevels(tribesandbelow).Thus,it
wasreasonablethattheconsensustreesofmatKproG
ducedweaklysupportedresults.However,whenthe
ITSandmatKdatasetwerecombinedtoanalyzethese
relationships,thebesttreetopologywasobtainedand
wasconsistentwiththedelimitationbasedontheir
morphologicalcharacters.UsingthiscombineddataG
set,mostofthecladeswerebetterdelimitedandmore
stronglysupported.Inthepresentstudy,thematK
fragmentswerestilusefulinresolvingtherelationG
shipsbelowsubtribeandthegenericrankwhencomG
binedwithITSsequences.
3.3SubtribeGlevelanalyses
Althoughsomesubtribeshavebeenpreviously
describedbybotanists,theywereconfusinganddidnot
haveconsistentmorphologicalcharacteristics.Bentham
(1881)divided“Epidendreae”intoninesubtribes,inG
cluding“Microstyleae”(Microstylidinae)whichcomG
binedwiththealreadyexisting“Liparideae”(LiparidiG
naeLindl.exMiq.).However,hisdescriptionof“MiG
crostyleae”wasveryshort,“anthererectordecumbent
oftenpersistent”,anddidnotlistanyofitsgenera.
Soonthereafter,BenthamandHooker(1883)changed
thename“Microstyleae”to“Malaxieae”(MalaxidiG
nae)andseparatelydescribed“Liparieae”(Liparidinae
Lindl.exMiq.).Boththeirsubtribescontainedplants
withapseudobulbousshootandterminalinfloresG
cences.Inaddition,thetypicalcharactersof“MalaxeG
ae”weredefinedashavingonetothreeleavesinthe
shoots,smaloftenminuteflowers,andanthersthatare
erectordecumbentoftenpersistent.TheyplacedMalG
axisandMicrostylisinthesubtribe.Incontrast,“LiG
parieae”wascharacterizedasplantswith “1Gmany
leavesoraphylusshoot;4rarely8,subequal,gathered
oroftenfree,inappendiculatapolinia.”“Liparieae”
embracedthesegeneraofLiparis (thetypeGgenus),
Oberonia,Gastroglotis,Microstylis,Chrysoglossum,
Orysicera,andDendrochilum.OberoninaewasdesigG
natedbyAveryanov(1991),itcontainsonlytwogeneG
854 广 西 植 物                  35卷
ra,Oberonia (thetypeGgenus)andHippeophyllum.
ManycommoncharacteristicsexistinthesetwogeneG
ra,suchasaslendershoot,duplicatefleshy,lateraly
compressedleaves,erectgynostemiumcolumn.Thus,
thelatterwasattributedtoOberonia (Chenetal.,
2009).However,the phylogeneticrelationship of
OberoniawasveryclosewithsomespeciesofLiparis
andformedamainsubtribeclade.Therefore,thissubG
tribeshouldcontainmoregenerainadditiontoOberoG
nia.Inaddition,Liuetal.(2008)proposedasubtribe
YpsilorchidinaebasedonasingleLiparisspecies‘LiG
parisfissipetala’.Theyrecorded “2granularGwaxy
poliniaeach withasomewhatelasticcaudicleand
deeplybilobedpetals”,buttheresultsofthemolecular
phylogeneticanalysisdidnotsupportthatthesubtribe
Ypsilorchidinaewasasinglesubtribe(Figs.1,2,3).
Ourresultssuggestthatthetribe Malaxideae
shouldbedividedintothreesubtribes.Thetypegenus
(thetypeisLiparisloeseli)ofLiparidinaeandthe
typegenus(thetypeisMalaxisspicata)ofMalaxidiG
naewereattributedtoonesubtribeinthisphylogenetic
analyses.LiparidinaeLindleyetal.(1855),hasprecedG
enceoverMalaxidinaeBenthetal.(1883).Thus,we
proposethatMalaxidinaeshouldbeattributedtothe
Liparidinae.Moreover,anewsubtribeshouldbeestabG
lishedaccordingtotheresultsofthemolecularphyloG
geneticanalyses,whichwenamedCrepidinaetentaG
tively.Nearlyalofthedatasetssupportedthedivision
ofLiparisinto11generaandMalaxisdividedintofive
generainthisstudy.Oberoniaisasinglemonophyletic
genusasthetypegenusofsubtribeofOberoninae.
3.3.1SubtribeLiparidinaeLindl.exMiq. Liparidinae
wasestablishedbyLindleyetal.(1855),accordingto
thecharacteristicsofcolumnparterect,basalyelongaG
ted,andthissubtribecontainedthegeneraLiparis
(thetypeGgenus),Oberonia,Gastroglotis,Microstylis,
Chrysoglossum,Orysicera,andDendrochilum.HowG
ever,GastroglotisisasynonymofDienia,whichwas
establishedbyLindley(1824).MicrostylisisasynoG
nymofMalaxis,andChrysoglossumisattributedto
CollabiumbySchlechter(1911).Inaddition,noother
informationisacquiredonOrysicera.Dendrochilumis
replacedinthetribeCoelogyninae(Pridgeonetal.,
2005).Recently,11generawereincludedinthissubG
tribe,includingStichorkis,Liparis,Orestias,CrossoG
glossa,Kornasia,Lisowskia,Oberonioides,AlatiliparG
is,Disticholiparis,PlatystyliparisandCrossoliparis
(Margońskaetal.,2012).However,thesegenera
cladescontainedterrestrialandepiphytichabitstaxa
andlackedconsistentmorphologicalcharacteristics.
Accordingtothismolecularanalysis,thissubtribe
consistsofsixgenera.Malaxiswerepolygeneticand
dividedintoMalaxiss.s.,Oberonioides,Lipariss.s.,
anunnamedcladecontainingM.monophyllos,andtwo
Liparisspecies(Figs.1,3).Thesegenerasharethe
sameterrestrialvegetativehabits,mainlygrowingin
grasslands,distributingoveraloftheEuropean,Asian
and American temperate grasslands,except for
Oberonioides,whichgrowsontheuniqueDanxiarocks
locatedinsouthChina.Inaddition,theirsimilarconduG
plicateleaveswitherinwinter,reservingtheirshort
andfleshypseudobulbstoovercomethecoldwinter.A
highlevelofdiferentiationappearsintheirfloralmorG
phology,suchasinflorescence,lipsandcolumn,andthe
lengthoftheovaryinthissubtribe.Ourphylogenetic
resultssuggestthatthesubtribeGlevelclassificationof
Malaxideaeshouldemploythecharacteristicsoftheir
habits,pseudobulbsandconduplicateleaves.Thus,we
suggestedthatnearlyalofthegrasslandspeciesinthe
tribeMalaxideaeshouldbeincludedinthesubtribeLiG
paridinae.
3.3.2SubtribeOberoninaeAver ThiscladewasdeG
scribed by Averyanov (1991) and revised by
Margońskaetal.(2012)Margońskaetal.(2012)reG
visedthissubtribe.Theyconsideredthemorphological
characteristicsofOberoninaeas“astemGlike,slender
shoot;duplicatefleshy,lateralycompressedleaves;a
shortand massive,erectgynostemium columnand
suberectanther”.Mostepiphyticgeneraandtaxa
formedasinglesubtribecladeaccordingtothisphyloG
geneticanalysis(Figs.1,2,3).Thus,wesuggested
thatOberoninaeshouldconsistofmoregenerainaddiG
tiontoOberonia,suchasCestichis,Platystyliparis,
Stichorkisandtwounnamedgenera (Figs.1,3).
ThesegeneradistributefromCentralAfricatoFrench
Polynesia,andfromIndiatoNew Guinea.Themain
9545期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
similarmorphologicalcharacteristicsofthissubtribe
areepiphytichabits,leafduplicateorcompressedunifaG
cialorbifacialfeatures.Accordingtotheresultsof
phylogeneticrelationshipof Malaxideae,wesuggest
thatthesubtribeOberoninaeshouldincludemostof
theepiphyticspeciesinthetribeMalaxideae.
In Oberoninae,Resmussen (1979)established
thegenusStichorkisThouarsaccordingtothedrawing
ofMalaxisdistichaThours(1809),whichwasdesigG
natedasiconolectotypes.Disticholiparis Marg.et
Szlach.isanobjectivejuniorsynonymofStichorkis
duetotheidenticaltypespecies(Thouars1809,1822;
Margońskaetal.,2004).Liuetal.(2008)proposeda
subtribeYpsilorchidinaeonthebasisoftwogranularG
waxypolinia,eachwitharelativelyelasticcaudicleand
deepbilobedpetals.OnlythemonotoypicYpislorchis
wasincluded.Itsspecies,Y.fissipetalawasnotrecovG
eredasadistinctlineageinthisphylogenticstudy,nor
domorphologicalattributessupportitsdistinctnessat
thesubtribelevel(Figs.1,2,3).Moredetailedstudies
arerequiredforthisclade.
3.3.3Crepidinaeclade Inthisstudy,weproposeda
newsubtribeCrepidinaetentativelyanddesignatedthe
genusCrepidiumasitstypeGgenus,becausethespecies
ofCrepidiumaremoreabundantthanothergenerain
thisclade.AlthoughthetypespeciesofC.rheedi
BlumewasdesignatedasthelectotypespeciesofCrepG
idium (Seidenfaden,1978;Alrichetal.,2011),butit
hasattributedtoEmpusa (Figs.1,2,3).Thenew
subtribeformsastablecladeonthisphylogenetictrees.
ThegenusDieniaisclosewithCrepidium (Figs.1,
3).ThesubtribeCrepidinaeconsistsoffivegenera
subclades:Crepidium,Diteilis,Dienia,Empusaand
anunnamedgenus(Figs.1,3).Thesegenerashare
somecommonmorphologicalcharacteristics:theyown
thesameterrestrialvegetativehabit,mainlygrowingin
thedeepforests,anddistributinginthetropicaland
subtropicalislandsofSoutheastAsia.TheyareparticG
ularlyabundantontheislandsofMalaysia,Java,IndoG
nesiaandNewCaledonia.OnlyonespeciesofDiteilis
nervosa (Liparisnervosa)distributsfromthePacific
islandstoCentralandSouth America.Theirlonger
pseudobulbsandevergreenplicateleavesenablethem
toadapttoforesthabitats.TwoLiparistaxaofL.
laxaandL.chalandeiformamonophylum(PP,BPMP
andBPML=100%;Fig.1)asthebasegroupofthis
clade,andthesetwoLiparisspeciesdistributontheisG
landofNew Caledonia.Thus,moredetailedstudies
shouldbeperformedonthesespecies.Accordingtothe
mainsimilarmorphologicalcharacteristics,wesuggest
thatthiscladeshouldincludetheterrestrialandplicate
leafspeciesinthetribeMalaxideae,becausetheyshare
samiliarforesthabitatsandlongerpseudobulbs.
4 Conclusions
Inthepresentstudy,weinvestigatedthephylogeG
neticrelationshipsofMalaxideaebasedoncombined
molecularevidence.Oberoniaismonophyletic,butLiG
parisandMalaxisarenotmonophyletic.Theycould
bedividedintothreemajorclades,whicharethesubG
tribesLiparidinae,Crepidinae (Wenamedhere,but
moredetaileddataandnewsequenceshouldbeusedto
confirmitsphylogeny),andOberoninae.TheterresG
trial Liparidinae comprises Malaxis,Liparis and
Oberonioidesandthreeunnamedgenera.Thenewly
establishedsubtribeCrepidinaecomprisesCrepidium,
Dienia,DiteilisEmpusaandanunnamedgenus.The
epiphyticOberoninaecomprisessixgenera,Oberonia,
Stichorkis,Cestichis,Platystyliparis andtwo unG
namedgenera.TheseunnamedgenerashouldbestudG
iedmorecarefulyinthefuturebeforetheirphylogeG
neticrelationshipsarerevised.Finaly,wedescribeda
newsubtribeandtwonewspeciesbasedonmolecular
andmorphologicalanalysis.
5 Taxonomictreatment
5.1Newsubtribe
CrepidinaeG.D.Tang,Z.J.Liuet X.Y.
Zhuang,nov.subtribe.NewsubtribeisdistantlyrelatG
edtothesubtribeLiparidinae,fromwhichitdifersby
havinglongerpseudobulbs,evergreenandplicateleavG
es.Itconsistsofthreeknowngeneraandoneunnamed
genera.TheyareCrepidium,Diteilis,Empusaandan
unnamedgenus.Typusgenus:Crepidium Blume,BiG
064 广 西 植 物                  35卷
jdr.Fl.Ned.Ind.,8:387,t.63(1825).LectotypespeG
cies:C.rheedi BlumedesignatedbySeidenfaden,
DanskBot.Arkiv,33(1):43(1978).
5.2Newspecies
(1)Platystyliparismalipoensissp.nov.G.D.
Tang,X.Y.Zhuang&Z.J.Liu.(Figs.4,5)
Type:China,Yunnan,Malipo,alt.1400 m,27
Feb.2009,Z.J.Liu4416(type,NOCC!)
Diagnosis:ThenewspeciesissimilartoPlatyG
styliparisassamica,fromwhichitdifersbyhavingoG
voidpseudobulbsandlipbaseconspicuouswith2auG
ricularlobesonbothsides,apexcaved.Columnbroad
andlarge.
Description:Epiphyticherbs.PseudobulbsaggreG
gate,oblongGfusiform,1.5-2.5cm×4-6mm,apicalG
lywith2-3leaves.LeaveselipticoroblongGobovate,
1.2-2.6cm ×5-7mm,apexacute,basecontracted
intoashortstalk,articulated.Scape5-10cmlong,
nearlywingless,nearlowerhalfofracemewith5-8
sterilebracts;raceme3-6cmlong,7-24Gflowered;
bractsovateGlanceolate,3-4mmlong;pedicelandoG
vary3.5-4.5mmlong;flowersyelowishGgreenwhen
young,laterbecameorangeGyelow;dorsalsepalnarG
rowlyovateGoblong,5-6×1.5-1.7mm,apexobtuse,
marginsbentforward;lateralsepalssuboblong,5-6×
2-2.2mm,apexobtuse,marginsbentforward;petals
narrowlylinear,5-6×0.3mm,apexacute;labelum
ovateGoblong,3.7-4mmlong,apextruncateandmuG
cronate,1.5mmabovebaseconspicuouscrispedand
flexuose,lookedlike2auricularmaterials,middlewith
athickcalusconcavecentraly;columnerect,3-3.5
mmlong,frontapicalywith2wings,relativelybroad,
belowmiddlewithapairofwingsonbothsides.PolG
linia4,2pairs,narrowlyovate.Fl.DecemberGMarch.
Distributionandhabitat:PlatystyliparismaliG
poensisisepiphytic,formingscatteredcolonieson
shadyandwetareasonthetrunksatelevationsof
1200-1600minevergreenbroadGleavedforestsof
Malipo,YunnanProvince,China;HaGiangVietnam.
Conservationstatus:Thenewspecieshasbeen
foundinfourpopulations,eachofwhichhasnomore
than50individuals.
Polinators:Weobservedthatthisnewspecies
waspolinatedbytheants,butmoredetailedresearch
shouldbetakeninfuturefordeeplyunderstandingthis
uniquespecies.
(2)Cestichispingtaoisp.nov.G.D.Tang,X.Y.
Zhuang&Z.J.Liu.(Figs.6,7)
Type:China,Yunnan,Malipo,alt.1400 m,14
Nov.2011,Z.J.Liu5814(type,NOCC!)
Diagnosis:ThenewspeciesissimilartoCestichis
manni,fromwhichitdifersbyhavingalongerpediG
celandovary,flowerlargebutthenumberarelesser,
labelum3-4mmligule,longand2-3mmbroad,
apicalmarginsentire.
Description:Epiphyticherbs.PseudobulbsobG
longGovoid,ovoidandoblong,1.5-2cm ×5-9mm,
nearlyflat,apicalywith1leaves.Leavesnarrowlinear
andlanceolate,9-17cm×8-18mm,papery,apexaG
cuminate,basecontractedintoashortstalk,articulated.
Inflorescence21-24cmlong,petioleflat,verynarG
rowlywinged,nearlowerhalfofracemewith1-8
sterilebracts;raceme13-16cmlong,10-20flowG
ered;bractsnarrowlanceolate,4-5mmlong;pedicel
andovary1-1.4cmlong;flowerslightgreenand
white;sepalnarrowlyovateGoblong,4-5×0.7mm;
petalsnarrowlylinear,5-6×0.4mm;labelumoblong
ligule,3-4×2-3mm,nearly3Globed,laterallobeseG
rect,obovoid,obtuse,midGlobeoblong,2-2.5×1.8-2
mm,baseecalose,apicalmarginsentire;column1.8-
2mmlong,slightlyarcuateforward,basedilatedand
thick.Polinia4,2pairs,oblongovate.Flowering,OcG
toberGDecember.
Distributionandhabitat:CestichispingtaoiisepiG
phytic,formingscatteredcoloniesonthewetareason
thetrunksatelevationsof1300-1600mineverG
greenbroadGleavedforestsofMalipo,YunnanProvG
ince,China.
Conservationstatus:Thenewspecieshasbeen
foundintwopopulations,eachofwhichhasnomore
than30individuals.
Polinators:Weobservedthatthisnewspecies
waspolinatedbythefungusgnats.MoredetailedreG
searchshouldbeundertakeninfuture.
Acknowledgments  We would liketo thank
CHENXuGHui,GUOXiGBin,CHENLiGJunfortheir
1645期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种
helpinthefieldwork,MAXueGYongforthedrawing
of new species;Philipp Bayer of University of
Queensland,Australia,forhelpinginthemanuscript
preparation.
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3645期      唐光大等:基于ITS和matK序列的兰科沼兰族分子系统研究及二新种