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Standard set Test set


1st
subset
2nd
subset
3rd
subset sum
1st
subset
2nd
subset
3rd
subset sum
Total
Exon 13011 2893 740 16644 21897 5123 1071 28091 44735
Intron 13989 2857 874 17720 18159 3676 920 22755 40475
A.thaliana
Chr
-
Intergenic 6092 2390 1080 9562 6604 2571 7387 16562 26124
Exon 8943 3626 780 13349 13489 6402 1390 21281 34630
Intron 9907 2319 2117 14343 15514 3477 2483 21474 35817
C.elegnas
Chr
-
Intergenic 4376 1210 845 6431 1347 9329 15760

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A. thaliana C. elegans

The first exon The mid exon The last exon The first exon The mid exon The last exon
Standard set 1000 1000 1000 1000 1000 1000
Test set 14609 66408 14791 9904 86743 10035

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C#%KbCL*M<ùú’N‰A. thaliana C. elegans
S C hr


Chr

Chr
 Chr
Chr


Chr

C hr

Chr

Chr
 Chr
Standard set 86.49 80.87 87.05 82.22 81.34 76.19 78.81 77.50 76.71 78.67
Test set
O verall rate
86.59
86.75
86.50
85.04
86.80
85.83
84.04
85.18
77.46
82.71
76.49
81.16
77.68
74.76
72.02
79.71
75.96
79.55
79.16
81.58

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$%&’( ! 134/ 56789:;8/ 6# <69# 84;8# ;48;# ?@83# !AB# CA# :7D# EC# 89@F49;/ 620 trinucleotides 40 trinucleotides 64 trinucleotides
class
Sn

Tn

CC

Sn

Tn

CC

Sn

Tn

CC

exon 91.68 90.51 81.24 89.70 90.90 83.64 85.16 88.36 77.41
Chr
(A) intron
inter
82.12
62.70
84.94
61.42
76.35
54.22
79.67
78.17
89.71
61.57
75.21
61.34
86.90
83.79
92.62
69.64
83.61
70.17
exon 88.60 88.82 81.60 80.28 87.70 72.56 91.55 87.55 83.14
Chr(A) intron
inter
71.85
87.80
85.48
63.94
64.67
68.28
76.22
82.91
83.45
60.27
68.26
62.82
75.17
77.73
86.30
67.10
68.87
63.51
exon 82.02 86.24 73.25 97.08 91.63 89.80 94.70 88.53 84.70
Chr(A) intron
inter
77.10
78.99
82.07
64.59
67.32
63.60
86.77
76.10
93.53
75.52
84.51
70.06
78.27
72.64
89.86
66.02
75.18
61.88
exon 80.50 84.86 71.41 81.30 89.12 73.74 83.80 97.85 84.79
Chr(A) intron
inter
78.20
72.54
81.42
62.64
68.24
57.11
78.47
93.84
86.81
60.60
71.87
70.53
84.28
89.91
89.46
63.32
79.09
68.37
exon 87.20 82.48 70.97 82.53 85.74 75.50 83.22 89.89 77.77
Chr
(C) intron
inter
87.59
53.53
77.54
79.58
73.22
58.33
85.88
66.36
75.99
86.61
63.46
71.07
82.34
82.07
83.22
67.24
69.80
68.92
exon 78.71 82.45 65.63 84.32 86.32 75.54 83.74 88.52 75.78
Chr(C) intron
inter
65.06
58.62
71.74
44.77
50.66
38.81
79.37
66.93
83.47
57.88
69.15
52.72
88.28
63.41
88.55
53.31
79.73
51.14
exon 87.74 87.46 81.36 77.91 86.29 73.35 84.52 87.11 79.05
Chr(C) intron
inter
74.02
71.34
82.13
61.87
65.14
51.69
76.71
72.68
83.10
59.34
67.84
48.74
78.63
71.59
82.02
64.15
68.20
53.54
exon 84.67 89.69 79.27 73.38 84.96 66.05 93.58 86.29 82.76
Chr(C) intron
inter
74.74
61.05
83.00
43.86
63.63
39.99
77.89
52.34
72.00
46.45
56.63
37.19
80.73
71.56
94.51
56.12
77.85
57.24
exon 91.39 79.62 77.63 76.38 85.69 70.69 78.07 91.65 77.04
Chr(C) intron
inter
63.15
79.91
91.45
46.62
59.21
51.54
80.06
73.69
91.40
45.62
74.47
47.69
81.38
88.02
97.07
46.92
80.39
55.86
exon 92.61 86.95 78.92 80.46 75.04 62.54 78.89 88.48 71.97
Chr(C) intron
inter
70.38
46.11
72.23
51.73
61.19
34.12
78.72
50.96
89.21
43.77
71.90
36.78
77.58
100.00
89.63
52.60
71.98
68.48

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The result of prediction

A. thaliana C. elegans Kinds Class
Sensitivity % Specificity % CC% Sensitivity % Specificity % CC%
the first exon 86.04 73.69 75.66 86.04 69.75 74.93
the mid exon

92.80

93.24

77.37

95.67

97.04

81.11

No.1
the last exon

81.73

95.54

86.48

87.13

97.72

89.03

the first exon

89.86

54.38

63.18

82.29

32.91

44.76

the mid exon

68.30

94.50

54.72

61.50

95.49

38.14

No.2

the last exon

89.01

55.62

63.70

87.34

33.89

47.45

the first exon

86.36

56.78

63.48

85.57

39.52

52.26

the mid exon

73.99

93.55

57.89

74.44

96.41

50.05

No.3

the last exon

88.27

62.12

68.49

87.96

49.07

61.19


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