Abstract:The genome data of Malus×domestica Borkh.‘Golden Delicious’ were downloaded from NCBI website,and 68 SSR primers i.e.four pairs from every chromosome were designed according to the SSR loci of genome and these primers were detected using 94 F1 progenies of Pyrus ‘Huangguan’ (from Pyrus bretschneideri ‘Xuehuali’×Pyrus pyrifolia ‘Shinseiki’)×Pyrus bretschneideri ‘Laiyang Chili’,and the genetic diversity of this progeny was analyzed.The results were shown that:(1)the amounts of primer which could produce the expected product is 40 (58.82% of total primers),and 16 primers were shown polymorphic by PCR reaction.(2)Based on the results of amplification using the 16 polymorphic primers in the above progeny,the average number of alleles (Na) and the effective number of alleles (Ne) were 2.312 5 and 2.001 4,respectively.The mean observed heterozygosity (Ho),the mean expected heterozygosity (He) and the mean Shannon’s information index (I) were 0.548 3,0.490 5 and 0.746 2,respectively.16 polymorphic primers used for Pyrus L.were developed based on apple genome.The transferability of the SSR locus from genus Malus to Pyrus was also demonstrated in this paper.