Abstract:The isolates 6382-43 and 6382-51 were intercepted from oilseed rape samples imported from Australia. The isolate 6382-43 with similar morphological characteristics to Leptosphaeria maculans showed a slower growth rate of 3.0mm/d with irregular margin of colony and no pigment production. The isolate 6382-51 with a faster growth rate of 4.8mm/d and regular margin of colony produced diffusible pigment. The result of PCR detection showed that the isolate 6382-43 could be amplified by L.maculans-specific primer LmacF/LmacR and the isolate 6382-51 got PCR product of 444bp by L.biglobosa-specific primer LbigF/LmacR. The sequence analysis revealed that the isolate 6382-43 had 99.8% sequence identity with L.maculans, and isolate 6382-51 showed 100% sequence similarity with L.biglobosa. Pathogenicity was confirmed on cotyledons of rape seed by artificial inoculation with typical symptoms of L.maculans and L.biglobosa. Based on the morphological characteristics, PCR detection, sequence analysis and pathogenicity test, the isolates 6382-43 and 6382-51 from Brassica napus seed sample were identified as Leptosphaeria maculans and L.biglobosa, respectively.