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Advance in differential proteomics research

差异蛋白质组学的研究进展



全 文 :Chinese Bulletin of Life Sciences
17 2
2005 4
Vol. 17, No.2
Apr, 2005
100850
2-DE MS 2-DE 2-D DIGE 2-DE
2-DE ICAT
2-DE
ICAT
Q 5 1 A
Advance in differential proteomics research
SUN Yan-Wei, JIANG Ying, HE Fu-Chu*
(Institute of Radiation Medicine, Academy of Military Medical Sciences , Beijing 100850 , China)
Abstract: Differential proteomics is a major research area in proteomics era, which mainly aims to detect and
confirm the different proteins caused by special stimulations between two or more group of samples. By
analysis of the differentiae between samples, in reverse, we can deduce what induce the variety patterns of
expression, hence it is useful in cancer pre-diagnosis, new drug development and cell regulation research. For
differential proteomics research, samples should be carefully dealt with in order to get an accurate and repro-
ducible result, therefore laser capture microdissection and some removing high-rebundant proteins techniques
are used. Now the association of 2-DE separation and MS identification are primarily used in the field, but some
new methods are appearing, for example, 2-DE DIGE, which overcome the demerit of it ancestor and suit this
kind of experiments much better, those techniques other than 2-DE such as multidimension chromatogram,
ICAT and protein chips have also been used, which can complement or substitute the conventional methods.
Key words: differential proteomics; 2-DE; chromatogram; ICAT; protein chips
1004-0374(2005)02-0137-04
2004-11-12 2004-12-16
2002-BA711A11 H030230280390
( 1 9 7 9 ) ( 1 9 7 5 ) 1 9 6 2
*
,
138
,
[1~2]
1
(
)
[3~4]
(2-DE)
(1) ; (2)
; (3)
[5]
(ICAT)
(MS/MS)
2
2.1
(LCM)
Shekouh [6] LCM
Wang [7]
Ahmed [8]
Affi-Gel Blue Aurum
Hynes
[9]
Laukel [10]
Turck [11]
2.2 2-DE
2-
DE MS
pH IPG
E1 Fakhry [12]
pH 3~10 4~7 5~6 6~11
Ahmed [8] pH4~7
2-DE
(2-D DIGE)
Tonge Zhou Yan
DIGE
[13~15]
2.3
2.3.1
ICAT
Hamler [16]
- -
(NPS-RP-HPLC)
pH
-
(ESI-TOF MS)
[ 16]
Allet [17]
2.3.2 ICAT ICAT
ICAT
ICAT
ICAT 8D 4D( )

MS/MS
ICAT
Brand [18]
NF-E2p18/MafK
ICAT
2.3.3
(SELDI-TOF MS)
Petricoin [19]
5 95%
Lal [20]
CD
[1] Werner T. Promoters can contribute to the elucidation of
protein function. Trends Biotechnol, 2003, 21(1):9~13
[2] Righetti P G, Castagna A, Antonucci F, et al. The proteome:
anno Domini 2002. Clin Chem Lab Med, 2003, 41(4):
425~438
[3] Unwin R D, Gaskell S J, Evans C A, et al. The potential for
proteomic definition of stem cell populations. Exp Hematol,
2003, 31(12):1147~1159
[4] Steen H, Mann M. The ABC (and XYZ ) of peptide
sequencing. Nat Rev Mol Cell Biol, 2004, 5(9):699~711
[5] Klose J, Nock C, Herrmann M, et al. Genetic analysis of the
mouse brain proteome. Nat Genet, 2002, 30(4):385~393
[6] Shekouh A R, Thompson C C, Prime W, et al. Application of
laser capture microdissection combined with two-dimen-
sional electrophoresis for the discovery of differentially regu-
lated proteins in pancreatic ductal adenocarcinoma.
Proteomics, 2003, 3(10):1988~2001
[7] Wang Y Y, Cheng P, Chan D W. A simple affinity spin tube
filter method for removing high-abundant common proteins
or enriching low-abundant biomarkers for serum proteomic
analysis. Proteomics, 2003, 3(3):243~248
[8] Ahmed N, Barker G, Oliva K, et al. An approach to remove
albumin for the proteomic analysis of low abundance
biomarkers in human serum. Proteomics, 2003, 3(10):
1980~1987
[9] Hynes S O, McGuire J, Falt T, et al. The rapid detection of
low molecular mass proteins differentially expressed under
biological stress for four Helicobacter spp. using ProteinChip
technology. Proteomics, 2003 , 3(3):273~278
[10] Laukel M, Rossignol M, Borderies G, et al. Comparison of
the proteome of methylobacterium extorquens AM1 grown
under methylotrophic and nonmethylotrophic conditions.
Proteomics, 2004 , 4(5):1247~1264
[ 11] Turck N, Richert S, Gendry P, et al. Proteomic analysis of
nuclear proteins from proliferative and differentiated human
140
colonic intestinal epithelial cells. Proteomics, 2004, 4(1):
93~105
[12] El Fakhry Y, Ouellette M, Papadopoulou B. A proteomic
approach to identify developmentally regulated proteins in
Leishmania infantum. Proteomics, 2002, 2(8):1007~1017
[13] Tonge R, Shaw J, Middleton B, et al. Validation and develop-
ment of fluorescence two-dimensional differential gel elec-
trophoresis proteomics technology. Proteomics, 2001, 1(3):
377~396
[14] Zhou G, Li H M, DeCamp D, et al. 2D differential in-gel
electrophoresis for the identification of esophageal scans
cell cancer-specific protein markers. Mol Cell Proteomics,
2002, 1(2):117~124
[15] Yan J X, Devenish A T, Wait R, et al. Fluorescence two-
dimensional difference gel electrophoresis and mass spec-
trometry based proteomic analysis of Escherichia coli.
Proteomics, 2002, 2(12):1682~1698
[16] Hamler R L, Zhu K, Buchanan N S, et al. A two-dimensional
liquid-phase separation method coupled with mass spec-
trometry for proteomic studies of breast cancer and biomarker
identification. Proteomics, 2004, 4(3):562~577
[17] Allet N, Barrillat N, Baussant T, et al. In vitro and in silico
processes to identify differentially expressed proteins.
Proteomics, 2004, 4(8):2333~2351
[18] Brand M, Ranish J A, Kummer N T , et al. Dynamic changes
in transcription factor complexes during erythroid differen-
tiation revealed by quantitative proteomics. Nat Struct Mol
Biol, 2004, 11(1):73~80
[19] Petricoin E F, Liotta L A. SELDI-TOF-based serum
proteomic pattern diagnostics for early detection of cancer.
Curr Opin Biotechnol, 2004, 15(1):24~30
[20] Lal S, Lui R, Nguyen L, et al. Increases in leukocyte cluster
of differentiation antigen expression during cardiopulmo-
nary bypass in patients undergoing heart transplantation.
Proteomics, 2004, 4(7):1918~1926
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